Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015862639.1_cds_XP_016515409.1_27759
CDS Infomation

[gene=LOC107832111] [db_xref=GeneID:107832111] [protein=UPF0481 protein At3g47200-like] [protein_id=XP_016515409.1] [location=complement(join(3146..3794,4166..5136))] [gbkey=CDS]
Sequence

ATGGTTGCAGTATTCAACAAAGATCTTTTGAGTTGGTACCTCATTACCCTCAAGCTCAAA
GAAACAGTTGATGCTGGTCTACAAAATGCTCCTACTCCTACCACCAGCAGATCCATTGAA
TTTCCAGAAGTGCCCTTACAACAACAACAGCAACTGCCCCTGTTGCATAAAGAACAACAT
CAGCCATCTGATTCTTTGAAAGTTACAATTGAGGAAAATGCTCCTATTATAGAAGAGGGC
CCTAAATCACCAGAATCGGAATGGGTAATTAGCATTAAGGAGAAATTAGAGCAAGCTAAA
CAGGATAATGATGCTGGATCATGGGCTAAACTCTCAATATACAGAGTCCCCTTAAGCTTG
CGTAAAGATGATGATAAAGCTTATATTCCTCAAATTGTTTCTCTTGGTCCTTATCACCAT
GGTAAAAGACGCCTACGCAATATGGATCGCCATAAATGGCGAGCCGTTTACCATATCCTC
AAGCGGACGAATCAAGAAATTAAACTGTATTTTGATGCAGTAAGAGAGCTTGAAGAGAAA
GCACGCGCTTGTTATGAAGGGAATATTACAATGAGCAGCAATGAGTTTGTTGAAATGATG
GTTCTTGACAGTTGTTTTGTTCTTGAGCTGTTTCGTGGAGTTGCTGGTGGATTCACGCAT
TTTGGTTATGCGAGGAATGATCCGATTTTCGCGATGCGAGGATCGATGCATTCTATTCAG
AGAGATATGATTATGATTGAGAATCAAATTCCACTATTTATACTTGATCGGTTGTATGGG
ATTCAATCTGAAATGCCTGATGAGAAAGGTATTGTAGCAAGGTTAGCTTTAAGGTTCTTT
GATCCATTGATGCCAACTGATGAGCCATTGACGCAGAGTGACTTGAACAAATTCAAGTCT
TCCATGGGACGTTCTACTTCTTTTGATCCGTTGGGAGACCTTGGTGGACTTCATTGCCTT
GATGTTTTCAGGAGGAGCCTTTTGCAGACAGGGCCTAAGCCAACACCTAGGACGTGGATC
AAGCGTTGGTCACATTCGAATCGGGTTGCAGACAAACGCAGGCAGCAATTGATTCATTGT
GTTTCGGAGCTAAAAGACGCTGGGGTTAAGTTCAAGAAAAGGAAGACTGATCGGTTCTGG
GATGTGAAATTTCAGAATGGAATCCTCAAAATGCCTAGGCTTTTAATCCATGATGGTACA
AAGTCACTTTTCCTCAACCTGATTGCTTTTGAACAATGCCATCTTGACTGCACCAATGAC
ATAACTTCGTACGTAATCTTCTTGGACAATTTGATTGATTCCCCAGAGGATGTTAGTTAC
CTCCATTATTGTGGAATAATTGAGCATTGGCTTGGTAATGACGCGGAAGTTGCTGACCTC
TTCAATCGGCTTTGTCAAGAGGTTGTTTTCGACATCAATGACAGTTACCTTTCACAGTTA
TCTGACCAAATTAACAGGTACTATGACCATAGGTGGAATGCTTGGCGTGCTACTTTAAGG
CACAAGTATTTCAACAACCCATGGGCAATTATCTCCTTCATTGCTGCTGTTATTTTGATA
ATGTTCACCTTTGCACAAACGTTTTATGGAGTCTATGGCTACTACAGACCACCTCAGTAG

Peptide Sequence

PEP ID

XP_016515409.1
PEP Infomation

PREDICTED: UPF0481 protein At3g47200-like [Nicotiana tabacum]
Sequence

MVAVFNKDLLSWYLITLKLKETVDAGLQNAPTPTTSRSIEFPEVPLQQQQQLPLLHKEQH
QPSDSLKVTIEENAPIIEEGPKSPESEWVISIKEKLEQAKQDNDAGSWAKLSIYRVPLSL
RKDDDKAYIPQIVSLGPYHHGKRRLRNMDRHKWRAVYHILKRTNQEIKLYFDAVRELEEK
ARACYEGNITMSSNEFVEMMVLDSCFVLELFRGVAGGFTHFGYARNDPIFAMRGSMHSIQ
RDMIMIENQIPLFILDRLYGIQSEMPDEKGIVARLALRFFDPLMPTDEPLTQSDLNKFKS
SMGRSTSFDPLGDLGGLHCLDVFRRSLLQTGPKPTPRTWIKRWSHSNRVADKRRQQLIHC
VSELKDAGVKFKKRKTDRFWDVKFQNGILKMPRLLIHDGTKSLFLNLIAFEQCHLDCTND
ITSYVIFLDNLIDSPEDVSYLHYCGIIEHWLGNDAEVADLFNRLCQEVVFDINDSYLSQL
SDQINRYYDHRWNAWRATLRHKYFNNPWAIISFIAAVILIMFTFAQTFYGVYGYYRPPQ

Transcript Sequence

Gene sequence data has not been registered.